If you’re looking for a delightful treat that satisfies your sweet tooth without the guilt, this Healthy Pumpkin Chocolate Chip Cookies Recipe is your new best friend in the kitchen. These cookies combine the rich, creamy texture of pumpkin puree with the warm spices of cinnamon, nutmeg, and ginger, all perfectly balanced by pockets of melted dark chocolate chips. They’re tender, slightly chewy, and offer a wholesome alternative to traditional cookies that still feel indulgent. Whether you’re craving something seasonal or just want a snack that feels nutritious and cozy, these cookies hit every note beautifully.

Ingredients You’ll Need
Simple pantry staples come together in this recipe to create a batch of deliciously spiced cookies that everyone will love. Each ingredient plays its part in giving these cookies their unique texture, flavor, and nutritional boost.
- 1 cup canned pumpkin puree: Adds moisture, natural sweetness, and a beautiful golden color while keeping the cookies soft.
- 1/2 cup coconut oil, melted: Provides healthy fats and a subtle tropical hint, replacing butter in a nutritious way.
- 1/2 cup maple syrup: A natural sweetener that brings depth and a slight caramel note, keeping the cookies healthier than refined sugar.
- 1 large egg: Binds all the ingredients together, giving structure without heaviness.
- 1 teaspoon vanilla extract: Enhances all the warm spices and chocolate, adding a sweet aroma.
- 1 1/2 cups whole wheat flour: Brings fiber and a hearty texture, making the cookies more filling and wholesome.
- 1 teaspoon baking soda: Helps the cookies rise and give that perfect tender crumb.
- 1 teaspoon ground cinnamon: Adds a classic pumpkin pie warmth that’s essential to this flavor profile.
- 1/2 teaspoon ground nutmeg: Gives a slightly nutty, spicy warmth that complements cinnamon perfectly.
- 1/2 teaspoon ground ginger: Adds a touch of zing and balances the sweetness beautifully.
- 1/2 teaspoon salt: Enhances all flavors and balances the sweetness.
- 1 cup dark chocolate chips: Creates melty pockets of rich chocolate that contrast the pumpkin’s mild sweetness.
How to Make Healthy Pumpkin Chocolate Chip Cookies Recipe
Step 1: Preheat the Oven
The first step in making these beauties is setting your oven to 350°F (175°C). Don’t forget to line your baking sheet with parchment paper or a silicone baking mat to ensure easy cookie removal and simple cleanup. Preparing your workspace sets the tone for smooth baking ahead.
Step 2: Combine Wet Ingredients
In a large mixing bowl, whisk together the canned pumpkin puree, melted coconut oil, maple syrup, egg, and vanilla extract. This combination creates the moist, tender base for your cookies with a lovely golden hue and subtle sweetness. Take a moment to appreciate how these wet ingredients are about to transform into something extraordinary!
Step 3: Mix Dry Ingredients
In a separate bowl, bring together the whole wheat flour, baking soda, ground cinnamon, nutmeg, ginger, and salt. Whisking these spices and leavening agent ensures they’re evenly distributed, so every bite has that perfect balance of flavor and rise.
Step 4: Combine Wet and Dry
Gradually add the dry ingredients to the wet mixture, stirring gently until just combined. Overmixing can toughen cookies, so take it easy here. Once the dough starts to come together, fold in the dark chocolate chips—you want those pockets of gooey chocolate throughout!
Step 5: Form the Cookies
Using a spoon or cookie scoop, drop dollops of dough onto your prepared baking sheet, spacing them about two inches apart to give each cookie room to spread and brown perfectly.
Step 6: Bake and Cool
Bake for 10 to 12 minutes, or until the edges are set and lightly browned. The centers will still look soft, which means they will be perfectly chewy once cooled. Let your cookies rest on the baking sheet for a few minutes before transferring them to a wire rack. This cooling time is key to developing their tender texture.
How to Serve Healthy Pumpkin Chocolate Chip Cookies Recipe

Garnishes
Sprinkle a light dusting of cinnamon or a few extra chocolate chips on top of the cookies right after baking to add a visual and flavor boost. A drizzle of melted dark chocolate or a touch of flaky sea salt offers a gourmet touch that elevates these simple cookies to something special.
Side Dishes
These cookies pair beautifully with a hot cup of spiced chai, pumpkin spice latte, or even a glass of cold almond milk. For a heartier snack, serve alongside a bowl of Greek yogurt topped with chopped nuts or a fresh fruit salad to brighten the plate.
Creative Ways to Present
Try stacking these cookies with layers of whipped coconut cream or a smear of nut butter between them for cookie sandwiches that surprise and delight. You can also break them into pieces and sprinkle over your morning oatmeal or ice cream as a flavorful crumble.
Make Ahead and Storage
Storing Leftovers
Keep your Healthy Pumpkin Chocolate Chip Cookies fresh by storing them in an airtight container at room temperature for up to 4 days. Placing a slice of bread in the container helps maintain moisture and keeps the cookies wonderfully soft.
Freezing
If you want to make these in advance, freeze the baked cookies in a single layer on a baking sheet, then transfer them to a freezer-safe container or bag. They’ll stay delicious for up to 3 months, making them perfect for last-minute snacks or holiday treats.
Reheating
Warm the cookies for 10 to 15 seconds in the microwave or pop them in a preheated oven at 325°F (165°C) for about 5 minutes. This brings back that freshly baked softness and wakes up the melty chocolate chips—like a warm hug from your oven!
FAQs
Can I use regular butter instead of coconut oil?
Absolutely! Butter will add a richer flavor and slightly different texture. If you prefer, swap the coconut oil 1:1 with melted butter for a traditional taste without sacrificing moisture.
Are these cookies gluten-free?
This particular recipe uses whole wheat flour, so it’s not gluten-free. However, you can experiment substituting a gluten-free flour blend to accommodate dietary needs, but results may vary slightly in texture.
Can I substitute the maple syrup for honey or another sweetener?
Yes, honey or agave syrup can work too. Just keep in mind these natural sweeteners may alter the flavor subtly and affect the cookie’s moisture balance, so you may want to reduce any extra liquid accordingly.
How long do these cookies keep their freshness?
Stored properly in an airtight container at room temperature, they maintain their freshness for about 4 days. Beyond that, they might start to dry out but are still great warmed up or crumbled over other dishes.
Can I make this recipe vegan?
Definitely! Replace the egg with a flax or chia egg (1 tablespoon ground seeds mixed with 3 tablespoons water) and ensure your chocolate chips are dairy-free. The cookies will still taste amazing and maintain their soft, chewy texture.
Final Thoughts
I can’t recommend this Healthy Pumpkin Chocolate Chip Cookies Recipe enough for anyone who loves cozy flavors without the extra guilt. It’s the perfect way to indulge in the fall spirit or brighten your snack time all year long. Give these cookies a try—you might just find your new favorite go-to treat that feels both nourishing and utterly delicious!
Print
Healthy Pumpkin Chocolate Chip Cookies Recipe
- Prep Time: 10 minutes
- Cook Time: 12 minutes
- Total Time: 22 minutes
- Yield: 24 servings
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
These Healthy Pumpkin Chocolate Chip Cookies combine the natural sweetness and moisture of pumpkin puree with whole wheat flour and dark chocolate chips to create a nutritious, delicious treat perfect for fall or any time of the year. Made with wholesome ingredients like coconut oil and maple syrup, these cookies are a healthier alternative to traditional chocolate chip cookies without sacrificing flavor.
Ingredients
Wet Ingredients
- 1 cup canned pumpkin puree
- 1/2 cup coconut oil, melted
- 1/2 cup maple syrup
- 1 large egg
- 1 teaspoon vanilla extract
Dry Ingredients
- 1 1/2 cups whole wheat flour
- 1 teaspoon baking soda
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/2 teaspoon ground ginger
- 1/2 teaspoon salt
Add-ins
- 1 cup dark chocolate chips
Instructions
- Preheat Oven: Preheat your oven to 350°F (175°C). Line a baking sheet with parchment paper or a silicone baking mat to prevent the cookies from sticking and promote even baking.
- Combine Wet Ingredients: In a large mixing bowl, whisk together the pumpkin puree, melted coconut oil, maple syrup, egg, and vanilla extract. Ensure the mixture is smooth and well combined to create a uniform base for the dough.
- Combine Dry Ingredients: In a separate bowl, whisk together the whole wheat flour, baking soda, ground cinnamon, ground nutmeg, ground ginger, and salt. This helps evenly distribute the leavening agent and spices throughout the flour.
- Mix Ingredients: Gradually add the dry ingredients to the wet ingredients, stirring gently until just combined. Avoid overmixing to keep the cookies tender. Fold in the dark chocolate chips evenly throughout the dough.
- Form Cookies: Drop spoonfuls of dough onto the prepared baking sheet, spacing them about 2 inches apart to allow for spreading during baking.
- Bake: Bake in the preheated oven for 10-12 minutes until the cookies are set and lightly browned around the edges.
- Cool: Allow the cookies to cool on the baking sheet for a few minutes before transferring them to a wire rack to cool completely, allowing them to firm up and develop the best texture.
Notes
- For a nut-free version, ensure your dark chocolate chips are processed in a nut-free facility.
- Coconut oil can be substituted with another mild-flavored oil like avocado or vegetable oil if preferred.
- Use canned pumpkin puree, not pumpkin pie filling, to avoid added sugars and spices.
- Store cookies in an airtight container at room temperature for up to 5 days, or freeze for longer storage.
- If you like a spicier cookie, increase the cinnamon and ginger by 1/4 teaspoon each.

