If you are craving a dessert that perfectly balances creamy, fruity, and sweet flavors all in one delightful bite, this Caramel Apple Cheesecake Cups Recipe is your new best friend. Imagine a buttery graham cracker crust cradling a smooth cream cheese filling, topped with warm cinnamon-spiced apple pieces and finished with a luscious drizzle of caramel sauce. Each individual cup bursts with fall-inspired goodness, making it an irresistible treat for any occasion. Whether you’re serving a crowd or simply indulging yourself, these cups bring comfort and joy in every spoonful.

Ingredients You’ll Need
The magic of this Caramel Apple Cheesecake Cups Recipe lies in its simple, high-quality ingredients that work together to create a symphony of flavors and textures. Every element contributes something special—from the crisp, buttery crust to the rich, creamy filling and the sweet, spiced apples on top.
- 1 cup graham cracker crumbs: Provides a crunchy, slightly sweet base that holds the cheesecake together.
- 2 tablespoons granulated sugar: Adds just the right amount of sweetness to the crust.
- 4 tablespoons melted butter: Binds the crust crumbs, creating that perfect crumbly texture.
- 8 oz cream cheese (softened): The rich and creamy heart of the cheesecake filling.
- 1/4 cup granulated sugar: Sweetens the cheesecake filling without overpowering it.
- 1 teaspoon vanilla extract: Infuses warmth and depth into the creamy filling.
- 1 large egg: Helps set the cheesecake filling for a smooth finish.
- 1 cup apple pie filling (chopped): Offers a burst of tender, cinnamon-spiced apple flavor that’s unmistakably fall.
- 1/2 teaspoon ground cinnamon: Adds cozy spice that perfectly complements the apples.
- 1/4 teaspoon ground nutmeg: Enhances the warm, aromatic notes of the apple mixture.
- 1/4 cup caramel sauce (plus more for drizzling): Brings a decadently sweet and buttery glaze that elevates each bite.
- Pinch of salt: Balances the sweetness and rounds out all the flavors.
- Whipped cream for topping (optional): Adds lightness and a fluffy finish if you want to indulge even more.
How to Make Caramel Apple Cheesecake Cups Recipe
Step 1: Prepare the Crust
Start by preheating your oven to 325°F and lining a muffin tin with paper liners—this will make clean-up a breeze and keeps each cup perfectly shaped. In a bowl, combine the graham cracker crumbs, 2 tablespoons sugar, and melted butter. Mix them until the crumbs are evenly moistened and hold together when pressed. Press about a tablespoon of this mixture firmly into the bottom of each muffin liner to create the sturdy base that will cradle all the creamy layers.
Step 2: Make the Cheesecake Filling
Next, beat the softened cream cheese in a bowl until it’s smooth and creamy without any lumps. Add 1/4 cup sugar, vanilla extract, and the egg, then mix until everything is fully combined. This creamy mixture will bake into a silky, luscious cheesecake layer that balances perfectly with the crispy crust and fruity topping.
Step 3: Assemble the Cups
Spoon the cheesecake mixture evenly over each crust, filling each muffin cup about two-thirds full. In a small bowl, combine the chopped apple pie filling with cinnamon, nutmeg, and a pinch of salt to enhance the natural sweetness and spice. Spoon a little of this apple mixture on top of each cheesecake cup, giving you that perfect fall apple pie flavor in every bite.
Step 4: Bake and Chill
Bake the cheesecake cups in the preheated oven for 18 to 20 minutes, until the centers are set but still slightly jiggly. This ensures a creamy texture without overbaking. Let the cups cool to room temperature before transferring them to the refrigerator for at least 2 hours. This chilling step is crucial—it helps the cheesecake set completely and melds all the flavors together beautifully.
Step 5: Add the Finishing Touches
Before serving, drizzle each cheesecake cup generously with caramel sauce for that irresistible sweet finish. If you want to take these treats over the top, add a dollop of whipped cream to balance the caramel’s richness with a fluffy lightness. Now you’re set to enjoy a dessert that feels homemade but looks stunning.
How to Serve Caramel Apple Cheesecake Cups Recipe

Garnishes
Elevate your Caramel Apple Cheesecake Cups Recipe by adding crunchy chopped pecans or toasted walnuts to the top before serving. A sprinkle of extra cinnamon, a few apple slices, or a drizzle of even more caramel can make the presentation pop and add textural contrast that delights the palate.
Side Dishes
These cheesecake cups are a fantastic dessert all on their own but pairing them with a warm cup of spiced apple cider or a scoop of vanilla ice cream brings an extra cozy vibe. A fresh green salad with tangy vinaigrette can balance the sweetness for a holiday meal, making your menu well-rounded and satisfying.
Creative Ways to Present
For a charming centerpiece at your next gathering, serve the cheesecake cups on a rustic wooden board lined with autumn leaves or cinnamon sticks. You can also try layering the ingredients in clear glass jars for a pretty parfait-style presentation. Each method turns this simple dessert into a showstopper that will have everyone asking for your Caramel Apple Cheesecake Cups Recipe.
Make Ahead and Storage
Storing Leftovers
These cheesecake cups keep beautifully in the refrigerator, tightly covered, for up to 4 days. Just be sure to drizzle the caramel sauce right before serving to keep the texture fresh and prevent the crust from becoming soggy.
Freezing
If you want to prepare them ahead of time, these cheesecake cups freeze well. Place them in an airtight container and freeze for up to one month. Thaw overnight in the fridge before serving, then add your caramel drizzle and whipped cream for that fresh-baked feeling.
Reheating
Because these are best served chilled, reheating is usually not necessary or recommended. However, if you prefer your caramel warm, try gently warming just the caramel sauce before drizzling it on top so you can enjoy a nice warm-sweet contrast.
FAQs
Can I use fresh apples instead of apple pie filling?
Absolutely! If you prefer using fresh apples, peel and chop them finely, then sauté with cinnamon, nutmeg, sugar, and a splash of lemon juice until tender. This gives you a fresher, less sweet topping that still fits wonderfully with the creamy cheesecake base.
Is it possible to make this recipe gluten-free?
Yes! Simply substitute the graham cracker crumbs with gluten-free graham crackers or crush gluten-free cookies for the crust. Just make sure your caramel sauce is gluten-free as well to keep the recipe safe.
How long can I prepare these in advance?
You can assemble the cups up to a day ahead of time. Bake them, allow them to cool, and refrigerate overnight. Add the caramel drizzle and whipped cream just before serving to keep everything fresh and delicious.
Can I double this recipe for a larger crowd?
Definitely! The recipe scales easily. Just be sure to have enough muffin tins or baking pans ready and extend your baking time slightly if using a larger pan for the crust and filling.
What makes this Caramel Apple Cheesecake Cups Recipe stand out?
It’s the perfect harmony of textures and flavors—the crumbly crust, the silky cheesecake, the warm spiced apples, and the sweet caramel drizzle all come together in portable, individually portioned cups. It’s like having apple pie and cheesecake in one bite, ideal for fall and all year round!
Final Thoughts
There’s something truly special about a dessert that feels both comforting and elegant, and this Caramel Apple Cheesecake Cups Recipe does exactly that. It’s perfect for sharing with friends and family or treating yourself to a little slice of joy any day of the week. I hope you’ll give these a try and watch as they quickly become a favorite in your dessert lineup!
Print
Caramel Apple Cheesecake Cups Recipe
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 cups
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
Delight in these Caramel Apple Cheesecake Cups, a perfect fall-inspired dessert combining a crunchy graham cracker crust, creamy cheesecake filling, and a sweet spiced apple topping finished with caramel drizzle and optional whipped cream. These individual cheesecake cups are easy to make and serve, ideal for parties or cozy gatherings.
Ingredients
Crust
- 1 cup graham cracker crumbs
- 2 tablespoons granulated sugar
- 4 tablespoons melted butter
Cheesecake Filling
- 8 oz cream cheese, softened
- 1/4 cup granulated sugar
- 1 teaspoon vanilla extract
- 1 large egg
Apple Topping
- 1 cup apple pie filling, chopped
- 1/2 teaspoon ground cinnamon
- 1/4 teaspoon ground nutmeg
- Pinch of salt
Finishing Touches
- 1/4 cup caramel sauce, plus more for drizzling
- Whipped cream for topping (optional)
Instructions
- Prepare the oven and muffin tin: Preheat the oven to 325°F (163°C) and line a muffin tin with paper liners to prevent sticking and ease serving.
- Make the crust: In a bowl, combine graham cracker crumbs, 2 tablespoons granulated sugar, and melted butter. Mix until evenly moistened to form a sandy mixture. Press about a tablespoon of this crust mixture firmly into the bottom of each muffin liner, creating an even base layer.
- Prepare the cheesecake filling: In another bowl, use a mixer to beat the softened cream cheese until smooth and creamy. Add 1/4 cup granulated sugar, vanilla extract, and the large egg, then mix until fully combined and smooth without lumps.
- Assemble the cheesecake cups: Spoon the cheesecake batter evenly over each crust in the muffin tin, filling cups nearly to the top but leaving space for the apple topping.
- Prepare the apple topping: In a small bowl, mix the chopped apple pie filling with ground cinnamon, ground nutmeg, and a pinch of salt to evenly distribute the spices and enhance flavor.
- Add the apple topping: Spoon a small amount of the spiced apple mixture over each cheesecake cup, gently pressing it onto the surface without mixing into the cheesecake batter.
- Bake: Place the muffin tin in the preheated oven and bake for 18 to 20 minutes, or until the centers are set and no longer jiggly—this indicates the cheesecake has fully cooked.
- Cool and refrigerate: Remove the cheesecake cups from the oven and allow them to cool at room temperature. Once cooled, refrigerate for at least 2 hours to let the flavors meld and the texture firm up for optimal taste and presentation.
- Serve: Before serving, drizzle additional caramel sauce on top of each cheesecake cup and optionally add a dollop of whipped cream for extra richness and presentation.
Notes
- For added texture and flavor, sprinkle chopped pecans on top of the apple mixture before baking.
- These cheesecake cups can be stored in the refrigerator for up to 4 days; keep covered to maintain freshness.
- Use full-fat cream cheese for the best creamy texture and flavor.
- If you don’t have apple pie filling, substitute with peeled, chopped fresh apples cooked with sugar and spices until soft.